PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008492-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 339aa    MW: 38281.8 Da    PI: 4.9247
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008492-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12131182155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i   A++++k+L+
  WALNUT_00008492-RA 131 QRMTHIAVERNRRKQMNEYLSMLRSLMPDS---YIQRGDQASIIGGAINFVKELE 182
                         79****************************...9******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-13129186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.06E-13129186No hitNo description
SuperFamilySSF474595.37E-16130194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.32130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-10131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-10136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MALEAVVFPQ DPFAYSTTGY NFLASGGNWS YDFVPQNEDE QQAGAFDSLE NQTENCLYGG  60
YHSSTPSMQV PAHDLNELHN YDPSTLDANN DTVLIANETH HVDHMSMTTM PTRPKRRRAK  120
SRKNKEEIEN QRMTHIAVER NRRKQMNEYL SMLRSLMPDS YIQRGDQASI IGGAINFVKE  180
LEQRLQLLGA QKESEEKCDA GDVSLPFSEF FTFPQYSTSS STNYYCDNYS VAAMSEQVGE  240
STQSAAIADI EVTMVESHAN LKIRSKRRPK QLLKVVSGLH TMRLTVLHLN VTTADEVVLY  300
SLSVKVEDDC KLSSVDEIAT AVHQMLGRIQ EDQEILLNY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131142RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1445062e-72EF144506.1 Populus trichocarpa clone PX0019_N17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147072.11e-138hypothetical protein PHAVU_006G093900g
TrEMBLV7BR621e-138V7BR62_PHAVU; Uncharacterized protein
STRINGPOPTR_0013s02680.11e-133(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-81bHLH family protein